Provides a Python-based FastMCP server for interacting with Reactome's Content and Analysis Services.
Sponsored
Reactome offers a Python FastMCP server, serving as a robust port of the original Reactome TypeScript proof of concept. It enables seamless integration with Reactome's comprehensive Content and Analysis Services, exposing 53 MCP tools for diverse tasks like pathway analysis, entity search, and data export, alongside 10 MCP resources. Designed to fit naturally into AI and bioinformatics workflows, this tool leverages FastMCP for efficient server communication over stdio, making it readily compatible with MCP-compatible clients like Claude Desktop and Claude Code.
Key Features
0153 MCP tools covering analysis, pathways, search, and more
0210 MCP resources, including static URIs and templates
03Directly uses Reactome Content Service and Analysis Service
04Runs over stdio, ready for Claude Desktop, Claude Code, or other MCP clients
05Maintains alignment with original TypeScript tool names and high-level output structure
060 GitHub stars
Use Cases
01Integrating Reactome data and analysis into AI applications
02Developing bioinformatics workflows that require programmatic access to Reactome
03Enabling natural language interaction with Reactome through MCP-compatible AI assistants
