BAM Filtration

Streamlines the preprocessing of sequencing data by automating the removal of technical artifacts from BAM files, such as unmapped reads and genomic blacklisted regions. Designed specifically for ChIP-seq and ATAC-seq workflows, it ensures data integrity through coordinate-sorting checks and read group validation before generating high-quality filtered outputs. This automated pipeline acts as an essential bridge between raw alignment and downstream analysis, helping researchers maintain a clean and reproducible bioinformatics environment while handling complex directory structures and tool dependencies.

Key Features

Use Cases