Does this skill support the Benchling Python SDK?

Yes, it provides implementation patterns and best practices for the official benchling-sdk, including authentication and entity management.

Can I use this to sync data with the Benchling Data Warehouse?

Yes, the skill covers querying the Data Warehouse using SQL to facilitate analytics, reporting, and external data synchronization.

How does this skill handle Benchling authentication?

It supports both API Key authentication for scripts and OAuth 2.0 Client Credentials for building secure Benchling Apps.

Can I automate Electronic Lab Notebook (ELN) entries?

Absolutely. This skill includes methods for creating entries, managing templates, and linking registry entities to notebook documentation.

What biological entities can be managed?

The skill supports DNA sequences, RNA sequences, AA (protein) sequences, custom entities, and mixtures within the Benchling Registry.

Benchling Integration

Name: Benchling Integration
Author: Microck

byMicrock

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Data Science & ML

Integrates Benchling’s R&D platform with Claude to automate life sciences workflows, manage biological registries, and streamline lab data operations.

This skill enables Claude to interact seamlessly with the Benchling cloud platform, providing a specialized framework for life sciences R&D automation. It offers comprehensive guidance on using the Benchling Python SDK and REST API to manage registry entities like DNA and protein sequences, track physical inventory across containers and locations, and programmatically update electronic lab notebook (ELN) entries. By implementing best practices for authentication, event-driven integrations via AWS EventBridge, and Data Warehouse querying, this skill helps developers build robust Benchling Apps and data pipelines that bridge the gap between biological research and computational efficiency.

Key Features

01Data Warehouse integration for querying historical R&D data via SQL.

02Workflow Automation for task management, status updates, and progress monitoring.

03Automated Inventory Operations including sample tracking, transfers, and box management.

04Programmatic ELN access for creating, updating, and linking lab notebook entries.

05Comprehensive Registry Management for DNA, RNA, and protein sequence entities.

0681 GitHub stars

Use Cases

01Triggering real-time notifications or external data syncs based on Benchling EventBridge events.

02Bulk importing biological sequences from external files directly into the Benchling Registry.

03Automating inventory audits and sample movements between storage locations.

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add microck/ordinary-claude-skills benchling-integration

For use in Claude.ai and ChatGPT

Download Skill