Can I use this to automate sample tracking?

Absolutely. The skill includes capabilities for creating containers, managing boxes, and performing bulk transfers within the Benchling inventory system.

How does it handle Benchling authentication?

It supports both API Key authentication for standalone scripts and OAuth Client Credentials for building multi-user Benchling Apps.

Can I trigger actions based on Benchling events?

Yes, the skill covers patterns for setting up event-driven integrations using AWS EventBridge to react to registry or workflow changes in real-time.

Does this skill support the Benchling Python SDK?

Yes, it provides comprehensive patterns and best practices for using the benchling-sdk for authentication, entity creation, and inventory management.

Is it possible to query the Benchling Data Warehouse?

Yes, the skill provides guidance on using SQL to access historical data for advanced analytics, reporting, and BI tool integration.

Benchling Integration

Name: Benchling Integration
Author: plurigrid

byplurigrid

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Productivity & Workflow

Automates life sciences R&D workflows by integrating Benchling's registry, inventory, and electronic lab notebook capabilities.

This skill empowers developers to programmatically interact with the Benchling R&D platform using the Python SDK and REST API. It streamlines complex laboratory operations such as managing biological sequences, automating sample inventory transfers, creating electronic lab notebook (ELN) entries, and orchestrating workflow tasks. By bridging the gap between computational tools and wet-lab data management, it enables seamless data synchronization, automated reporting via the Benchling Data Warehouse, and event-driven integrations for modern biotech research and development.

Key Features

01Automated inventory tracking for containers, plates, and locations

02Registry management for DNA, RNA, and protein sequence entities

038 GitHub stars

04ELN entry creation and programmatic notebook documentation

05Workflow task orchestration and status synchronization

06Data Warehouse connectivity for SQL-based laboratory analytics

Use Cases

01Automating high-throughput sample transfers and location updates in the inventory

02Syncing experimental results from external lab instruments directly to notebook entries

03Bulk importing genomic sequences from FASTA files into the Benchling registry

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add plurigrid/asi benchling-integration

For use in Claude.ai and ChatGPT

Download Skill