Does this skill require a Benchling account?

Yes, you need an active Benchling tenant URL and valid credentials—either an API key for scripts or OAuth client credentials for apps—to use this integration.

Does it support bulk operations?

Yes, it leverages the Benchling Python SDK's built-in support for pagination, generators, and batch updates to handle large-scale data operations efficiently.

Benchling is a cloud-based platform specifically designed for life sciences R&D, serving as a centralized registry, inventory manager, and electronic lab notebook.

Is it possible to query the Data Warehouse?

Yes, the skill provides documentation on how to connect to the Benchling Data Warehouse using SQL for analytics, reporting, and historical data export.

Can I manage physical inventory with this skill?

Absolutely. The skill supports managing physical samples, including creating containers and boxes, updating contents, and performing transfers between storage locations.

Benchling Integration

Name: Benchling Integration
Author: Microck

byMicrock

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Productivity & Workflow

Integrates Claude with the Benchling R&D platform to automate life sciences data management, registry entities, and laboratory workflows.

This skill empowers Claude to interact directly with the Benchling cloud platform, facilitating the programmatic management of biological entities like DNA and protein sequences, laboratory inventory, and electronic lab notebook (ELN) entries. It provides standardized patterns for using the Benchling Python SDK and REST API, enabling researchers and developers to automate complex R&D workflows, perform bulk data migrations, and sync experimental results with external systems or the Benchling Data Warehouse. By providing specific guidance on authentication, schema mapping, and event-driven architectures, it streamlines the development of Benchling Apps and lab automation scripts.

Key Features

01Comprehensive Registry Management for DNA, RNA, and protein sequences

02Automated Inventory Control for samples, containers, and location transfers

03Electronic Lab Notebook (ELN) entry creation and documentation automation

0489 GitHub stars

05Workflow Task Management for orchestrating complex laboratory processes

06Event-driven integration support via AWS EventBridge for real-time syncing

Use Cases

01Generating and updating experiment documentation directly from code

02Automating the bulk import of FASTA sequences into the Benchling Registry

03Building custom automation for tracking sample movements across lab locations

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add microck/ordinary-claude-skills benchling-integration

For use in Claude.ai and ChatGPT

Download Skill