Does this skill support the official Benchling Python SDK?

Yes, it provides comprehensive guidance and implementation patterns for the benchling-sdk, including installation and advanced usage.

Can I query the Benchling Data Warehouse with this skill?

Yes, it includes guidance on querying historical R&D data using SQL through the Benchling Data Warehouse for analytics and reporting.

Can I use this to automate DNA sequence registration?

Absolutely. The skill includes patterns for creating, updating, and registering DNA, RNA, and Protein sequences within the Benchling Registry.

What authentication methods are supported?

The skill covers both API Key authentication for internal scripts and OAuth 2.0 Client Credentials for building Benchling Apps.

Does it handle Benchling Inventory operations?

Yes, it supports managing containers, boxes, and locations, including transferring items and managing complex storage hierarchies.

Benchling Integration

Name: Benchling Integration
Author: Activer007

byActiver007

0•

Data Science & ML

Automates Life Sciences R&D workflows by integrating Benchling registry, inventory, and notebook operations via Python SDK and REST API.

The Benchling Integration skill enables developers and lab researchers to programmatically manage biological data and laboratory workflows within the Benchling R&D platform. It provides specialized guidance for using the Benchling Python SDK and REST API to automate entity registration for DNA, RNA, and proteins, manage physical inventory, and update electronic lab notebook (ELN) entries. This skill is ideal for building custom Benchling Apps, syncing data with external systems, or automating complex laboratory workflows with built-in best practices for authentication, error handling, and data warehouse querying.

Key Features

01Automated registry management for DNA, RNA, and AA sequences

020 GitHub stars

03Event-driven integration support via AWS EventBridge and Benchling Workflows

04Full support for Benchling Python SDK and REST API implementation patterns

05Physical inventory tracking including containers, boxes, and locations

06Electronic Lab Notebook (ELN) automation and entry management

Use Cases

01Syncing physical sample locations and container data with external laboratory databases

02Automating bulk imports of sequence data from FASTA files into the Benchling Registry

03Orchestrating complex laboratory workflows by updating task statuses and assignments programmatically

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add activer007/ordinary-claude-skills benchling-integration

For use in Claude.ai and ChatGPT

Download Skill