Can I manage physical lab inventory with this skill?

Yes, it covers the creation, updating, and transfer of containers, boxes, and locations, as well as batch operations for bulk inventory management.

Is it possible to query the Benchling Data Warehouse?

Yes, the skill provides guidance on accessing the Benchling Data Warehouse via SQL for historical data analysis and integration with BI tools.

Does this skill support the Benchling Python SDK?

Yes, it provides detailed patterns and implementation guides for the benchling-sdk, including authentication, entity management, and pagination strategies.

How does it handle Benchling authentication?

It supports multiple methods including API Key authentication for standalone scripts and OAuth Client Credentials for building multi-user Benchling Apps.

Can I use this to automate DNA sequence registration?

Absolutely, the skill includes specific code patterns for creating, updating, and registering DNA, RNA, and AA sequences programmatically in the Registry.

Benchling R&D Integration

Name: Benchling R&D Integration
Author: Activer007

byActiver007

0•

Data Science & ML

Integrates Benchling’s life sciences platform with Claude to automate laboratory workflows, manage biological registry entities, and sync inventory data via API.

This skill enables Claude to interact seamlessly with the Benchling R&D platform, providing a specialized interface for managing biological data, laboratory inventory, and electronic lab notebooks (ELN). It streamlines life sciences research by automating sequence registration for DNA, RNA, and proteins, tracking physical samples across storage locations, and managing complex laboratory workflows through the Benchling Python SDK and REST API. Whether you are building custom Benchling Apps, setting up event-driven integrations with AWS EventBridge, or querying the Data Warehouse for analytics, this skill provides the implementation patterns and best practices required for robust biotech automation.

Key Features

01Comprehensive Registry management for DNA, RNA, and protein sequences

02Automated inventory operations for samples, containers, and storage locations

03Workflow task automation and status tracking for laboratory processes

04Integration support for Benchling Data Warehouse SQL queries and AWS EventBridge

050 GitHub stars

06Programmatic access to Electronic Lab Notebook (ELN) entries and templates

Use Cases

01Automating bulk sequence imports from FASTA files into the Benchling Registry

02Syncing laboratory inventory data between Benchling and external management systems

03Building event-driven laboratory automations that trigger on workflow status changes

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add activer007/ordinary-claude-skills benchling-integration

For use in Claude.ai and ChatGPT

Download Skill