About
deepTools is a specialized skill for Claude Code that streamlines the analysis of high-throughput sequencing data such as ChIP-seq, RNA-seq, and ATAC-seq. It provides researchers and bioinformaticians with automated workflows for converting BAM files to normalized coverage tracks, performing rigorous quality control assessments like PCA and correlation analysis, and generating detailed heatmaps or profile plots around genomic features. By integrating domain-specific best practices and normalization methods like RPGC and CPM, this skill ensures reproducible and accurate genomic data interpretation directly through Claude's interface.
