Can I use this for clinical research?

Yes, the skill provides access to clinical data fields including biomarker associations, disease links, and normal/abnormal concentration ranges in biological fluids.

Does this skill support spectral data analysis?

Yes, it assists in workflows for matching experimental NMR and MS spectra against the HMDB's extensive reference library for metabolite identification.

What is the HMDB Database skill?

It is a specialized capability for Claude that provides domain-specific guidance and data retrieval patterns for the Human Metabolome Database, covering over 220,000 metabolites.

Is there a public API for HMDB?

HMDB does not have a public REST API; programmatic access typically requires contacting their development team or using R packages like hmdbQuery, which this skill can help navigate.

How can I search for metabolites using this skill?

You can search by metabolite name, synonyms, HMDB ID, chemical formula, or structure-based identifiers like SMILES and InChI strings.

HMDB Database Integration

Name: HMDB Database Integration
Author: Activer007

byActiver007

0•

Data Science & ML

Accesses and queries the Human Metabolome Database to retrieve detailed information on over 220,000 metabolites for research and analysis.

The HMDB Database skill empowers Claude to interact with the Human Metabolome Database, a comprehensive resource for small molecule metabolites found in the human body. It provides researchers, bioinformaticians, and data scientists with streamlined access to chemical properties, clinical biomarker data, biological pathways, and spectroscopic data (NMR/MS). Whether performing untargeted metabolomics, biomarker discovery, or pathway analysis, this skill facilitates the identification and characterization of metabolites by bridging the gap between experimental data and the vast HMDB repository.

Key Features

01Access to clinical information including disease associations and concentrations

020 GitHub stars

03Retrieval of chemical taxonomy, formulas, and molecular weight data

04Support for spectral matching workflows using NMR, MS, and MS-MS data

05Integration with metabolic pathways and associated enzymes or transporters

06Metabolite search by name, HMDB ID, or chemical structure (SMILES/InChI)

Use Cases

01Discovering clinical biomarkers by cross-referencing metabolites with specific diseases

02Mapping metabolic pathways and enzymatic reactions for biological interpretation

03Identifying unknown compounds in untargeted metabolomics research

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add activer007/ordinary-claude-skills hmdb-database

For use in Claude.ai and ChatGPT

Download Skill