Can I backup notebooks with attachments using this skill?

Yes, the skill includes specific scripts to perform complete notebook backups, with options to include or exclude file attachments in 7z or JSON formats.

Is an enterprise license required to use the API features?

Generally, LabArchives API access requires an enterprise license. You will need an API access key ID and password provided by your institution's LabArchives administrator.

Does this skill support regional LabArchives endpoints?

Yes, it supports US/International, Australian, and UK regional API endpoints to ensure data compliance and optimal performance for global institutions.

How does the skill handle authentication security?

The skill utilizes a configuration script to securely manage API credentials and user authentication tokens, recommending the use of environment variables or protected config files.

LabArchives ELN Integration

Name: LabArchives ELN Integration
Author: Sologa

bySologa

0•

Data Science & ML

Automates electronic lab notebook workflows including data uploads, notebook backups, and programmatic entry management via the LabArchives REST API.

This skill empowers researchers and developers to programmatically interact with the LabArchives electronic lab notebook platform to streamline scientific data management. It provides a robust set of tools for managing notebooks, retrieving user information, and automating the documentation process directly from the command line. By leveraging the LabArchives REST API, the skill facilitates secure backups, seamless file attachments, and the generation of institutional reports. Whether you are syncing experimental data from Jupyter notebooks or managing large-scale research repositories, this integration ensures data integrity and operational efficiency across various regional endpoints.

Key Features

01Automated creation of notebook entries and multi-format file uploads

02Pre-configured scripts for authentication setup and entry management

03Support for regional API endpoints across US, Australia, and the UK

04Detailed site report generation for institutional usage tracking and auditing

050 GitHub stars

06Programmatic notebook backup and data extraction with full attachment support

Use Cases

01Automating the upload of high-throughput experimental data and metadata to an ELN

02Setting up recurring, programmatic backups of institutional notebooks for disaster recovery

03Integrating computational workflows by syncing Jupyter notebook outputs directly to LabArchives entries

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add sologa/codex-pipeline labarchive-integration

For use in Claude.ai and ChatGPT

Download Skill