Nextflow Bioinformatics Development

This skill empowers researchers and bench scientists to execute standardized nf-core bioinformatics pipelines—specifically RNA-seq, Sarek (WGS/WES), and ATAC-seq—without requiring deep command-line expertise. It manages the entire analysis lifecycle, including fetching public datasets from GEO/SRA, performing environmental health checks for Docker and Nextflow, automatically generating validated samplesheets, and executing containerized workflows with built-in resume capabilities for robust data processing.

Key Features

Use Cases