Can I manage team permissions through this skill?

Yes, it includes comprehensive support for managing workspaces, including listing members, requesting access, and organizing shared protocol repositories for labs.

How is authentication handled for the API?

The skill facilitates secure authentication using either personal client access tokens or full OAuth 2.0 flows for multi-user applications.

Does this skill support formal DOI issuance?

Yes, the skill provides specific guidance on using the API to publish protocols and issue unique DOIs for formal citation in academic research.

What can I do with the Protocols.io Claude Code skill?

You can search, create, update, and publish scientific protocols, manage lab workspaces, upload data files, and participate in community discussions programmatically.

What content formats are supported for protocol steps?

The integration supports retrieving and updating protocol content in Draft.js JSON, HTML, and Markdown formats via the v3 API.

Protocols.io Integration

Name: Protocols.io Integration
Author: Zehong-Wang

byZehong-Wang

0•

Learning & Documentation

Integrates with the protocols.io API to programmatically manage, share, and discover scientific protocols and laboratory workflows.

This skill connects Claude directly to the protocols.io ecosystem, enabling researchers and developers to automate the creation, documentation, and publication of scientific methods. It facilitates seamless management of protocol steps, reagents, and collaborative workspaces, making it an essential tool for maintaining reproducible research standards, organizing lab repositories, and integrating protocol data into broader bioinformatics or LIMS workflows. By providing programmatic access to the full protocol lifecycle—from initial draft to DOI publication—it helps scientific teams maintain rigorous documentation while accelerating the discovery of existing experimental procedures.

Key Features

01Advanced discovery tools to search protocols by keywords, categories, or specific DOIs

02Community engagement support through threaded discussions and step-level commenting

03Integrated file management for attaching experimental data, images, and documents to steps

04Full protocol lifecycle management including creation, versioning, and DOI publication

05Collaborative workspace organization with role-based permissions and team management

060 GitHub stars

Use Cases

01Programmatically searching for and analyzing published methods for meta-analysis or replication studies

02Building custom laboratory information management systems (LIMS) that sync with protocols.io

03Automating the migration of internal lab documents into standardized, citable protocols.io formats

What are Skills?·How to Install

Install with 🐟 Skill.Fish

npx skillfish add zehong-wang/kosmos protocolsio-integration

For use in Claude.ai and ChatGPT

Download Skill