Data Science & ML Agent Skills

PyDESeq2 Analysis

2,188

Performs comprehensive differential gene expression analysis from bulk RNA-seq count data using the Python implementation of DESeq2.

ClinVar Genomic Analysis

2,188

Queries the NCBI ClinVar database to interpret genetic variant pathogenicity and annotate genomic data for research and medicine.

Pymatgen Materials Science

2,188

Enables advanced materials science research through crystal structure manipulation, thermodynamic analysis, and Materials Project database integration.

FluidSim CFD Framework

2,188

Simulates high-performance computational fluid dynamics using pseudospectral methods and Python-based analysis.

Gtars Genomic Analysis

2,188

Processes and analyzes high-performance genomic interval data for computational biology and machine learning applications.

Flow Cytometry Data Processor

2,188

Parses and manipulates Flow Cytometry Standard (FCS) files, converting biological data into NumPy arrays and CSV formats for scientific analysis.

ETE Toolkit for Phylogenetics

2,188

Manipulates, analyzes, and visualizes phylogenetic and hierarchical trees for genomic research and evolutionary biology.

RDKit Cheminformatics

2,188

Performs advanced molecular analysis, manipulation, and chemical informatics tasks using the RDKit toolkit.

PyMC Bayesian Modeling

2,188

Builds, fits, and validates robust Bayesian models using PyMC's modern probabilistic programming interface.

PyOpenMS Mass Spectrometry

2,188

Facilitates advanced mass spectrometry data analysis using the Python interface to the OpenMS library for proteomics and metabolomics.

Reactome Pathway Analysis

2,188

Integrates the Reactome database to perform pathway enrichment, gene-pathway mapping, and molecular interaction analysis for systems biology.

Mass Spectrometry Analysis (Matchms)

2,188

Processes and analyzes mass spectrometry data using the Matchms library for spectral similarity and metadata harmonization.

PyTDC Drug Discovery

2,188

Accesses AI-ready Therapeutics Data Commons (TDC) datasets and benchmarks for drug discovery and pharmaceutical machine learning.

Adaptyv Protein Lab

2,188

Facilitates automated protein testing and validation through the Adaptyv cloud laboratory platform.

MarkItDown Document Converter

2,188

Converts complex documents, images, and multimedia files into clean, token-efficient Markdown for optimized LLM processing.

NCBI Gene Database Explorer

2,188

Integrates NCBI Gene data access into Claude for querying sequences, functional annotations, and genomic metadata.

RCSB PDB Database Access

2,188

Enables programmatic access to the RCSB Protein Data Bank for searching, retrieving, and analyzing 3D structures of biological macromolecules.

Qiskit Quantum Computing

2,188

Builds, optimizes, and executes quantum circuits and algorithms on simulators or real hardware using the Qiskit framework.

PyTorch Geometric Graph Learning

2,188

Develops and trains Graph Neural Networks (GNNs) for node classification, link prediction, and geometric deep learning tasks.

Bioinformatics & Genomic Data (gget)

2,188

Provides unified, rapid access to over 20 genomic databases and bioinformatics analysis tools for DNA and protein research.

STRING Protein Interaction Database

2,188

Analyzes protein-protein interaction networks and performs functional enrichment using the STRING database's 20 billion interactions.

Scientific Hypothesis Generation

2,188

Formulates testable, evidence-based scientific hypotheses and experimental designs from observations or literature synthesis.

Pymoo Optimization

2,188

Solves complex single and multi-objective optimization problems using evolutionary algorithms and Pareto front analysis.

LatchBio Bioinformatics Workflows

2,188

Builds and deploys serverless bioinformatics pipelines using the Latch SDK and cloud infrastructure.

Modal Serverless Python

2,188

Runs Python code in the cloud with serverless containers, autoscaling GPUs, and minimal infrastructure management.

Metabolomics Workbench Database

2,188

Accesses the NIH Metabolomics Workbench to query over 4,200 studies, standardize metabolite nomenclature, and perform mass spectrometry searches.

CELLxGENE Census Analysis

2,188

Accesses and analyzes over 61 million standardized single-cell genomics records from the CZ CELLxGENE Census.

GWAS Catalog Explorer

2,188

Queries the NHGRI-EBI GWAS Catalog to retrieve genetic variant associations, study metadata, and genomic summary statistics.

Scikit-Learn Machine Learning

2,188

Implements comprehensive machine learning workflows using scikit-learn for classification, regression, clustering, and data preprocessing.

ZINC Database Search

2,188

Accesses over 230 million purchasable chemical compounds for virtual screening, drug discovery, and molecular docking studies.