Data Science & ML Agent Skills

CocoIndex AI Data Framework

Builds high-performance, incremental AI data transformation pipelines for vector databases and knowledge graphs.

PyOpenMS Mass Spectrometry Analysis

Processes and analyzes mass spectrometry data for proteomics and metabolomics research using the OpenMS framework.

Medicinal Chemistry & Molecular Filtering

Applies industry-standard medicinal chemistry rules and structural alerts to filter and prioritize molecular compound libraries.

LaminDB Biological Data Management

Manage, validate, and trace biological datasets using a FAIR-compliant data framework and standardized biological ontologies.

Histolab Digital Pathology

Processes whole slide images (WSI) for digital pathology by automating tissue detection and tile extraction for machine learning pipelines.

Plotly Interactive Data Visualization

Generates interactive, publication-quality scientific and statistical charts using Plotly Express and Graph Objects.

RAG Implementation Expert

Build and optimize Retrieval-Augmented Generation (RAG) systems using vector databases, embeddings, and sophisticated semantic search patterns.

Molecular Featurization (Molfeat)

Provides a comprehensive suite of 100+ molecular featurizers for converting chemical structures into machine learning-ready numerical representations.

AnnData Scientific Data Management

Manages annotated data matrices for single-cell genomics and large-scale biological datasets using the AnnData framework.

Dask Parallel Computing

Scales Python, pandas, and NumPy workflows across multiple cores or clusters for larger-than-memory datasets.

OpenAlex Academic Literature

Queries and analyzes the OpenAlex database to search scholarly literature, track citations, and perform bibliometric analysis.

Denario Scientific Research

Automates the entire scientific research lifecycle from data analysis and hypothesis generation to publication-ready LaTeX manuscripts.

RAG Implementation & Engineering

Builds robust Retrieval-Augmented Generation (RAG) systems using vector databases and advanced semantic search architectures.

Vaex Big Data Analysis

Processes and visualizes massive tabular datasets with billions of rows using memory-efficient out-of-core DataFrames.

Advanced Excel & Spreadsheet Engineering

Creates, modifies, and analyzes professional Excel spreadsheets with automated formula recalculation and industry-standard financial formatting.

Matchms Spectrometry Analysis

Processes and analyzes mass spectrometry data using Python for metabolomics and chemical identification.

Architecting Memory

Designs and implements evolutionary persistent memory architectures for AI agent systems using RAG and Knowledge Graphs.

AI Prompt Architect

Architects high-performance AI prompts using advanced complexity-based standards, attention management, and structural optimization patterns.

Multi-Agent Orchestration

Implements advanced agentic patterns to prevent context saturation and optimize parallel execution within Claude Code environments.

D3.js Data Visualisation

Builds interactive, bespoke data visualisations with fine-grained SVG control using the d3.js library.

Edge AI Optimizer

Optimizes AI models for resource-constrained edge devices using advanced quantization, memory management, and battery-smart inference patterns.

Statistical Data Analysis

Performs rigorous statistical analysis, hypothesis testing, and APA-compliant reporting for academic and experimental research.

Flow Nexus Neural Networks

Trains and deploys complex neural network architectures within distributed E2B sandbox environments using Flow Nexus.

ETE Toolkit Phylogenetic Analysis

Manipulates, analyzes, and visualizes phylogenetic trees with advanced support for evolutionary event detection and NCBI taxonomy integration.

Bioinformatics & Genomic Data (gget)

Provides a unified interface for rapid bioinformatics queries across 20+ genomic databases including Ensembl, AlphaFold, and NCBI.

Product Expert Design

Designs adaptive user-facing agent experts to create personalized product experiences and dynamic UX.

AI Agents Architect

Designs and implements autonomous AI agents with sophisticated tool use, memory systems, and multi-agent orchestration.

AI Agents Architect

Architects and implements robust autonomous AI agents with sophisticated tool use, memory systems, and multi-agent orchestration.

Denario AI Scientific Research Assistant

Automates end-to-end scientific research workflows from initial data analysis and hypothesis generation to publication-ready LaTeX manuscripts.

Excel & Spreadsheet Master

Automates professional Excel spreadsheet creation, financial modeling, and data analysis with error-free formula verification.