Data Science & ML Agent Skills

PubMed Database Research

Automates biomedical literature searches and data retrieval from the PubMed database using advanced MeSH queries and the E-utilities API.

Scientific Critical Thinking

Evaluates scientific research rigor and methodology through systematic analysis of experimental design, statistical validity, and potential biases.

NeuroKit2 Biosignal Analysis

Processes and analyzes complex physiological data including ECG, EEG, and EDA for scientific research and health applications.

CSV Data Summarizer

Analyzes CSV files automatically to generate comprehensive statistical summaries and tailored visualizations using Python and pandas.

Statsmodels Statistical Toolkit

Provides a comprehensive suite of statistical modeling tools for rigorous inference, hypothesis testing, and econometric analysis in Python.

Transformers AI Model Integration

Integrates Hugging Face Transformers for advanced natural language processing, computer vision, and audio tasks within development workflows.

Pymatgen Materials Science

Facilitates advanced materials analysis, crystal structure manipulation, and computational workflows using the Python Materials Genomics library.

FDA Database Access

Simplifies querying the openFDA API to analyze regulatory data, drug safety profiles, medical device clearances, and food recalls.

Vaex Big Data Analysis

Processes and analyzes massive tabular datasets with billions of rows using out-of-core DataFrame operations and lazy evaluation.

Advanced XLSX Spreadsheet Automation

Automates professional-grade spreadsheet creation, editing, and analysis with a focus on formula integrity and financial modeling standards.

HMDB Database Explorer

Accesses the Human Metabolome Database (HMDB) to retrieve metabolite data, chemical properties, and clinical biomarkers for metabolomics research.

GWAS Catalog Database

Queries the NHGRI-EBI GWAS Catalog to retrieve SNP-trait associations, genetic variant data, and genome-wide association study summary statistics.

Metabolomics Workbench Database

Integrates with the NIH Metabolomics Workbench REST API to query metabolite data, standardized nomenclature, and experimental studies for biomarker discovery.

ClinicalTrials.gov Database

Accesses the ClinicalTrials.gov API v2 to search, filter, and export global clinical research data for medical analysis.

Deep Learning Scholar

Automates the collection of authoritative deep learning resources and generates structured, multi-stage learning paths with interactive HTML guides.

PyTorch Geometric (PyG) Support

Enables development and training of Graph Neural Networks (GNNs) using the PyTorch Geometric library.

bioRxiv Research Database Search

Searches and retrieves life sciences preprints from the bioRxiv database with advanced filtering and PDF download capabilities.

Trading Strategy Research

Streamlines the development, validation, and systematic documentation of trading strategies and market edges.

Scientific Brainstorming

Facilitates collaborative research ideation by generating hypotheses, identifying research gaps, and exploring interdisciplinary connections for scientific problem-solving.

Adaptyv Protein Lab

Connects Claude to cloud laboratory services for automated protein testing, sequence optimization, and wet-lab validation.

RDKit Cheminformatics

Provides comprehensive cheminformatics capabilities for molecular analysis, manipulation, and drug discovery workflows.

Architecture Synthesis

Generates comprehensive reference architecture specifications and implementation roadmaps for custom AI agent frameworks.

Data, AI & Machine Learning Roadmap

Provides comprehensive guidance and implementation patterns for data science, machine learning engineering, and AI application development.

ML Training Debugger

Diagnoses and resolves machine learning training failures like loss divergence and gradient issues through automated artifact analysis.

Gemini Real Adapter

Facilitates direct integration with the Google Gemini API for multi-modal content handling and context management within multi-model infrastructures.

Ensembl Genome Database Integration

Accesses the Ensembl REST API to retrieve genomic sequences, gene annotations, and variant data for over 250 species.

DNAnexus Genomics Integration

Streamlines genomics pipeline development and data management on the DNAnexus cloud platform using the dxpy Python SDK.

Scholar Evaluation Framework

Systematically evaluates research papers, literature reviews, and academic methodologies using the ScholarEval framework to ensure scientific rigor and novelty.

Academic Literature Review

Conducts systematic, multi-database academic literature reviews with automated citation verification and professional formatting.

AlphaFold Database Integration

Accesses and analyzes over 200 million AI-predicted protein structures from the AlphaFold DB for structural biology and drug discovery.