Data Science & ML Agent Skills

Single-Cell Genomics Analysis (scvi-tools)

Analyzes single-cell omics data using probabilistic models for tasks like batch correction, dimensionality reduction, and differential expression.

Matplotlib Data Visualization

Create publication-quality charts, graphs, and complex data visualizations using Python's foundational plotting library.

Hypogenic AI Hypothesis Generator

Automates scientific hypothesis generation and empirical testing using large language models and research literature integration.

RDKit Cheminformatics

Performs advanced molecular modeling, chemical property calculation, and substructure analysis using the RDKit toolkit.

Invariant Measure Analysis

Analyzes dynamical systems to identify measures preserved by flow and evaluate qualitative stability behavior.

Evidence Evaluator

Evaluates the credibility and quality of information sources using standardized scientific frameworks and the CRAAP test.

World Extractable Value (WEV)

Quantifies and extracts financial value from system inefficiencies by modeling transitions between selfish equilibria and optimal states.

Modelica Multi-Domain Modeling

Simulates complex physical systems using acausal equation-based modeling and Wolfram Language integration.

COBRApy Metabolic Modeling

Performs constraint-based reconstruction and analysis (COBRA) of metabolic models for systems biology and metabolic engineering.

OMERO Microscopy Data Management

Integrates Claude with the OMERO platform to manage, analyze, and automate bioimaging data workflows using the Python API.

Biopython Molecular Biology

Automates biological computation tasks including sequence analysis, structural bioinformatics, and programmatic NCBI database access.

GNU Scheme Cognitive Infrastructure

Deploys the GNU Scheme ecosystem to build secure, distributed cognitive agents using Active Inference and WebAssembly.

Dynamical Systems Semi-conjugacy

Analyzes and maps the qualitative transformations between dynamical systems using topological semi-conjugacy methods.

TrueALIFE Automata

Implements self-indexing automata and metabolic computation models at the intersection of quantum and classical logic.

Clinical Decision Support

Generates professional, publication-ready clinical decision support documents and biomarker-stratified cohort analyses for pharmaceutical and clinical research.

Gestalt Hacking & Pattern Logic

Analyzes and manipulates data patterns using Gestalt perceptual principles and topological logic to identify emergent structures.

Specter ACSet Navigation

Provides high-performance, bidirectional data navigation and transformation for Julia collections, S-expressions, and ACSets.

Plurigrid ASI Orchestrator

Orchestrates complex AI skill ecosystems using category theory, topological synthesis, and deterministic GF(3) conservation.

GMRA Multi-Resolution Analysis

Performs high-dimensional geometric multi-resolution analysis with deterministic local reconstructability across MATLAB, Julia, and Python.

Topological Logic & GF(3) Verification

Verifies mathematical conservation laws and manages autopoietic logic within topological computational frameworks.

Gay MCP Topological Genesis

Generates and evolves topological code patterns through autopoietic interaction and color-based seeds.

Operad Composition Skill

Enables structured generation and algebraic composition of n-ary operations using colored operads.

Py-ACSets Graph Rewriting

Performs complex algebraic graph rewriting over Attributed C-Sets (ACSets) using DPO, SPO, and SqPO methodologies.

HVM Parallel Runtime

Implements massively parallel functional computation using interaction nets and GPU-accelerated graph reduction.

Tripartite Decompositions

Decomposes complex computational problems into three GF(3)-balanced components for optimized parallel execution and sheaf-theoretic gluing.

Last Passage Percolation Modeling

Simulates and analyzes Last Passage Percolation models to study Tracy-Widom fluctuations, geodesics, and KPZ universality.

Mutual Awareness Graph Modeler

Maps and analyzes bidirectional observation relationships between agents using sheaf-theoretic consistency and multi-agent awareness graphs.

GNU Radio SDR & Signal Processing

Builds and manages complex signal processing flowgraphs and custom Python blocks for Software Defined Radio (SDR) applications.

Enzyme.jl Automatic Differentiation

Implements high-performance LLVM-level automatic differentiation for Julia code on both CPU and GPU architectures.

Networked Dynamical Systems

Models and analyzes dynamical systems on graphs to evaluate qualitative behaviors like stability, sinks, and bifurcations.