Data Science & ML Agent Skills

DeepChem Molecular ML

Simplifies molecular machine learning workflows for drug discovery, property prediction, and materials science using DeepChem's specialized toolsets.

PennyLane Quantum Computing

Develops and optimizes quantum machine learning models and circuits across multiple hardware platforms using automatic differentiation.

deepTools NGS Analysis

Processes and visualizes high-throughput sequencing data to generate publication-quality genomic insights and quality control reports.

Statistical Analysis for Research

Performs comprehensive statistical hypothesis testing, regression analysis, and Bayesian modeling with automated assumption checking and APA-style reporting.

Stable Baselines3 Reinforcement Learning

Implements and optimizes reinforcement learning workflows using Stable Baselines3 to train reliable RL agents and design custom Gym environments.

Scientific Critical Thinking

Evaluates scientific research rigor and methodology through systematic analysis of experimental design, statistical validity, and potential biases.

Vercel AI SDK Assistant

Simplifies the development of AI-powered features and autonomous agents using the Vercel AI SDK.

Pymatgen Materials Science

Facilitates advanced materials analysis, crystal structure manipulation, and computational workflows using the Python Materials Genomics library.

Vaex Big Data Analysis

Processes and analyzes massive tabular datasets with billions of rows using out-of-core DataFrame operations and lazy evaluation.

Python Data Grouping Patterns

Optimizes Python data structures using defaultdict for efficient grouping, adjacency lists, and nested dictionary management.

Metabolomics Workbench Database

Integrates with the NIH Metabolomics Workbench REST API to query metabolite data, standardized nomenclature, and experimental studies for biomarker discovery.

Priority Queue Implementation Patterns

Implements high-performance priority queues for pathfinding, scheduling, and stream processing using efficient heap-based structures.

ClinicalTrials.gov Database

Accesses the ClinicalTrials.gov API v2 to search, filter, and export global clinical research data for medical analysis.

Counter Frequency Patterns

Implements efficient counting and frequency analysis patterns using Python's collections.Counter for data processing and distribution analysis.

Constraint Satisfaction Solver

Solves complex logic puzzles and scheduling problems using Peter Norvig's propagate-then-search algorithmic pattern.

Scientific Brainstorming

Facilitates collaborative research ideation by generating hypotheses, identifying research gaps, and exploring interdisciplinary connections for scientific problem-solving.

RDKit Cheminformatics

Provides comprehensive cheminformatics capabilities for molecular analysis, manipulation, and drug discovery workflows.

Local LLM Management

Manages local Ollama LLM models for development, testing, and VRAM optimization within Claude Code workflows.

Ensembl Genome Database Integration

Accesses the Ensembl REST API to retrieve genomic sequences, gene annotations, and variant data for over 250 species.

Python Comprehension Chain Patterns

Implements elegant, idiomatic data transformations using Pythonic list, dictionary, and set comprehensions inspired by Peter Norvig.

Civitai Video Performance Analyst

Analyzes Civitai video engagement and content metrics through natural language SQL queries and automated reporting.

Scholar Evaluation Framework

Systematically evaluates research papers, literature reviews, and academic methodologies using the ScholarEval framework to ensure scientific rigor and novelty.

Norvig Sparse Set Pattern

Implements memory-efficient sparse data structures using Python sets for infinite grids and large coordinate spaces.

Local Search Optimizer

Solves NP-hard optimization problems using greedy construction and iterative local improvement patterns.

Python NamedTuple Records

Implements immutable, memory-efficient data structures using Python's namedtuple for cleaner and more readable code.

AlphaFold Database Integration

Accesses and analyzes over 200 million AI-predicted protein structures from the AlphaFold DB for structural biology and drug discovery.

Python Operator Overloading DSL

Enables the creation of expressive domain-specific languages in Python by overloading arithmetic and logical operators.

Pymoo Optimization Assistant

Solves complex single, multi, and many-objective optimization problems using evolutionary algorithms and Pareto-optimal analysis.

Python Memoization Patterns

Optimizes Python functions by implementing memoization and dynamic programming patterns to eliminate redundant recursive computations.

Reactome Biological Pathways & Analysis

Queries the Reactome database to perform biological pathway analysis, gene-pathway mapping, and expression enrichment for systems biology research.