Data Science & ML Agent Skills

UniProt Protein Database

2,188

Accesses the UniProt REST API to search, retrieve, and map protein sequence and functional data directly within scientific workflows.

ZINC Database Search

2,188

Accesses over 230 million purchasable chemical compounds for virtual screening, drug discovery, and molecular docking studies.

ChEMBL Database & Drug Discovery

2,188

Queries the ChEMBL database for bioactive molecules, drug targets, and bioactivity data to accelerate medicinal chemistry and drug discovery research.

DNAnexus Integration

2,188

Streamlines biomedical data management and genomics workflow automation on the DNAnexus cloud platform.

PyTorch Lightning

2,188

Streamlines deep learning development by organizing PyTorch code into scalable, boilerplate-free LightningModules and automated training workflows.

AlphaFold Protein Database

2,188

Accesses and analyzes over 200 million AI-predicted protein structures from the AlphaFold DB for structural biology and drug discovery.

RDKit Cheminformatics

2,188

Performs advanced molecular analysis, manipulation, and chemical informatics tasks using the RDKit toolkit.

Pymatgen Materials Science

2,188

Enables advanced materials science research through crystal structure manipulation, thermodynamic analysis, and Materials Project database integration.

Scientific Hypothesis Generation

2,066

Generates and tests scientific hypotheses from observational data and research literature to accelerate empirical discovery and predictive modeling.

Pydicom

2,066

Manages medical imaging data by reading, writing, and anonymizing DICOM files while providing guidance on pixel extraction and metadata manipulation.

Data Commons Client

2,066

Provides programmatic access to global statistical data, demographics, and economic indicators via the Data Commons knowledge graph.

PyHealth Healthcare AI

2,066

Develops, tests, and deploys healthcare-specific machine learning models using clinical data, medical coding systems, and physiological signals.

Stable Baselines3

2,066

Implements reinforcement learning workflows including agent training, custom environment design, and parallelized experimentation using the Stable Baselines3 library.

Exploratory Data Analysis

2,066

Conducts automated exploratory data analysis on over 200 scientific file formats to extract metadata, assess quality, and generate comprehensive documentation reports.

Biomni Biomedical AI

2,066

Executes complex autonomous biomedical research tasks across genomics, drug discovery, and clinical analysis using integrated databases and code execution.

DrugBank Database

2,066

Accesses and analyzes comprehensive pharmaceutical data from DrugBank including molecular structures, drug interactions, targets, and pharmacological properties.

Scikit Survival

2,066

Performs advanced survival analysis and time-to-event modeling in Python using specialized machine learning techniques for censored data.

Astropy Astrophysics Toolkit

2,066

Facilitates advanced astronomical research and data analysis using Python for coordinate transformations, FITS file manipulation, and cosmological calculations.

Vaex Data Analysis

2,066

Processes and visualizes billion-row tabular datasets exceeding available RAM through lazy, out-of-core DataFrame operations.

Aeon Time Series Machine Learning

2,066

Provides specialized algorithms and workflows for comprehensive time series analysis, including classification, forecasting, and anomaly detection.

Cirq Quantum Computing

2,066

Designs, simulates, and executes quantum circuits across diverse hardware backends and simulators using Google's open-source framework.

Genomic Interval Machine Learning

2,066

Facilitates machine learning on genomic interval data by training embeddings for regions, single-cell ATAC-seq, and associated metadata.

Transformers

2,066

Implements, fine-tunes, and deploys pre-trained transformer models for natural language processing, computer vision, and audio tasks.

Denario Scientific Research

2,066

Automates the end-to-end scientific research lifecycle from data-driven hypothesis generation to the production of publication-ready LaTeX manuscripts.

OpenAlex Database

2,066

Queries and analyzes millions of scholarly works, authors, and institutions using the OpenAlex API to facilitate comprehensive bibliometric research.

SHAP Model Interpretability

2,066

Explains machine learning model predictions and feature importance using Shapley values for improved transparency and debugging.

SimPy Simulation

2,066

Models complex discrete-event systems where entities interact with shared resources over time using process-based Python simulations.

AnnData

2,066

Manages and analyzes annotated data matrices for single-cell genomics and large-scale biological datasets in Python.

LaminDB

2,066

Manages biological datasets with end-to-end lineage tracking, ontology-based curation, and FAIR data principles using a unified Python API.

Scientific Resource Detection

2,066

Detects system hardware capabilities and generates strategic recommendations for optimized scientific computing and data processing tasks.