Data Science & ML Agent Skills

GWAS Catalog Explorer

Queries the NHGRI-EBI GWAS Catalog for genetic variants, SNP-trait associations, and summary statistics to support genetic epidemiology research.

Political Science Analyst

Analyzes global events, policy changes, and power dynamics using established political science frameworks and international relations theories.

Scientific Data Visualization

Generates publication-quality scientific figures and multi-panel layouts compliant with major journal standards.

HMDB Database Explorer

Accesses the Human Metabolome Database to retrieve detailed chemical, clinical, and biological data for over 220,000 metabolites.

scikit-survival Analysis

Performs comprehensive survival analysis and time-to-event modeling using the scikit-survival Python library.

DNAnexus Integration

Streamlines genomics data analysis and pipeline development on the DNAnexus cloud platform using the dxpy SDK and CLI tools.

pyOpenMS Proteomics Toolkit

Processes mass spectrometry data for proteomics and metabolomics analysis using the pyOpenMS library.

DeepTools Bioinformatics Suite

Analyzes and visualizes high-throughput sequencing data for genomics research and quality control.

Video Processing

Provides structured guidance for video analysis, motion detection, and temporal event tracking using computer vision techniques.

Ensembl Genome Database

Queries the Ensembl REST API to retrieve genomic annotations, sequences, variants, and comparative genomics data for over 250 species.

Datamol Cheminformatics

Simplifies molecular cheminformatics workflows by providing a Pythonic interface for RDKit with sensible defaults and parallel processing.

Matchms MS Data Processing

Processes and analyzes mass spectrometry data using Python-based spectral similarity and metadata harmonization.

OMERO Microscopy Data Management

Manages and analyzes microscopy data through the OMERO Python API, including image processing, metadata handling, and ROI management.

RStan to PyStan Conversion

Translates Stan statistical models and inference code from R (RStan) to Python (PyStan 3.x) while handling API mappings and output differences.

GPT-2 Code Golf Implementation

Implements neural network inference for transformer architectures within extreme code size constraints and minimal environments.

SimPy Simulation

Builds and optimizes discrete-event simulation models to analyze complex systems like logistics, manufacturing, and networks.

Protein Data Bank (PDB) Integration

Accesses and interacts with the RCSB Protein Data Bank to search, retrieve, and analyze 3D structures of biological macromolecules.

PubChem Database Explorer

Accesses the world's largest chemical database to retrieve compound properties, structures, and bioactivity data for cheminformatics workflows.

DNA Assembly

Designs and validates DNA assembly strategies, including Golden Gate and Gibson assembly, with precise requirements for Type IIS restriction enzyme primers.

PyTorch Model CLI Implementation

Implements standalone command-line inference tools in C, C++, and Rust by extracting weights and logic from PyTorch models without Python dependencies.

DNA Insert Primer Design

Designs and validates specialized primers for DNA sequence insertion into plasmids using site-directed mutagenesis protocols.

COSMIC Cancer Genomics Access

Accesses the world's largest somatic mutation database for cancer research and precision oncology data retrieval.

Adaptive Rejection Sampler

Provides specialized guidance for implementing efficient Adaptive Rejection Sampling algorithms for log-concave probability distributions.

Transformers

Integrates state-of-the-art machine learning models for NLP, computer vision, and audio tasks using the Hugging Face ecosystem.

Letta Agent Designer

Provides architectural guidance and best practices for designing memory-intensive AI agents using the Letta framework.

Scikit-learn Machine Learning Toolkit

Implements comprehensive machine learning workflows including classification, regression, and data preprocessing using the industry-standard Scikit-learn library.

MuJoCo MJCF Tuning

Optimizes MuJoCo MJCF simulation files to improve computational performance while maintaining high physics accuracy and stability.

Metabolomics Workbench Database

Accesses the NIH Metabolomics Workbench to query metabolite data, study metadata, and standardized nomenclature for biomarker discovery.

Matplotlib Visualization Expert

Generates professional, publication-quality Python visualizations including line plots, heatmaps, and 3D charts using the Matplotlib library.

LatchBio Integration

Builds and deploys serverless bioinformatics workflows using the Latch Python SDK and cloud infrastructure.