Data Science & ML Agent Skills

GEO Database

Accesses and analyzes NCBI Gene Expression Omnibus (GEO) datasets for transcriptomics and functional genomics research.

MechInterp Feature Overview

Provides a rapid diagnostic summary of Sparse Autoencoder (SAE) features to generate research hypotheses and identify model behaviors.

ENA Database Access

Simplifies retrieval of nucleotide sequences, raw reads, and genome assemblies from the European Nucleotide Archive for bioinformatics pipelines.

HMDB Database Integration

Accesses and queries the Human Metabolome Database to retrieve detailed information on over 220,000 metabolites for research and analysis.

ENA Bioinformatics Integration

Accesses and retrieves genomic data from the European Nucleotide Archive for bioinformatics research and pipelines.

European Nucleotide Archive (ENA) Access

Connects Claude to the European Nucleotide Archive (ENA) for retrieving genomic sequences, raw reads, and metadata.

Bioinformatics Services (BioServices)

Provides programmatic access to over 40 bioinformatics web services and databases for integrated biological data analysis.

BioServices Bioinformatics Toolkit

Provides programmatic access to over 40 bioinformatics web services and databases for integrated biological data analysis and workflow automation.

PyLabRobot Lab Automation

Automates laboratory workflows and controls hardware like liquid handlers, plate readers, and incubators using a unified Python interface.

RDKit Cheminformatics

Performs advanced molecular analysis, property calculation, and structural manipulation for cheminformatics workflows.

Financial Change-Point Detection

Detects structural breaks and regime shifts in financial time-series using Gaussian Process models to identify market transitions.

AI Text Classifier & ML Engine

Categorizes text, detects sentiment, and filters spam using pre-trained and custom-trained machine learning models.

scvi-tools Single-Cell Omics

Performs advanced single-cell omics data analysis using probabilistic models for RNA-seq, ATAC-seq, and spatial transcriptomics.

NeuroKit2 Biosignal Processing

Processes and analyzes physiological biosignals including ECG, EEG, EDA, and respiratory patterns for psychophysiology and clinical research.

NeuroKit2 Biosignal Analysis

Analyzes and processes complex physiological signals like ECG, EEG, and EDA using the comprehensive NeuroKit2 Python library.

NeuroKit2 Biosignal Processing

Processes and analyzes diverse physiological signals including heart rate, brain activity, and respiratory patterns for research and clinical applications.

Arboreto Gene Regulatory Network Inference

Infers gene regulatory networks (GRNs) from transcriptomics data using scalable machine learning algorithms like GRNBoost2 and GENIE3.

PyHealth Healthcare AI

Builds and deploys healthcare machine learning models using specialized tools for EHR data, clinical tasks, and medical coding systems.

DiffDock Molecular Docking

Predicts 3D protein-ligand binding poses using state-of-the-art diffusion-based deep learning models for structure-based drug design.

PyHealth: Healthcare AI Toolkit

Simplifies the development and deployment of machine learning models for clinical data and healthcare applications.

RDKit Cheminformatics Toolkit

Performs advanced molecular manipulation, chemical property calculation, and 3D coordinate generation for cheminformatics workflows.

Histolab Digital Pathology

Processes digital pathology whole slide images (WSI) for tissue detection, tile extraction, and deep learning dataset preparation.

Astropy Mastery

Facilitates professional-grade astronomical data analysis and astrophysical calculations using the core Astropy Python library.

Pinecone Vector Database Integration

Integrates Pinecone's managed vector database into your AI workflows to enable high-performance RAG, semantic search, and recommendation systems.

Document Ranking and Scoring

Ranks and filters retrieved documents based on vector similarity metrics to optimize RAG pipeline relevance.

LangGraph Architect

Architects and implements sophisticated graph-based AI agents and multi-agent workflows using LangGraph.

Context Engineering Fundamentals

Master the core principles and mechanics of context management to build more efficient and accurate AI agent architectures.

Document Citations & RAG

Implements robust document attribution and Retrieval-Augmented Generation (RAG) patterns for verifiable AI responses.

Shanghai Silver Stock Drain Detector

Quantifies Shanghai silver inventory depletion using 3D metrics to identify supply tightening signals for macro analysis.

Astropy Astronomy Toolkit

Processes and analyzes astronomical data using the Astropy library for coordinate transformations, cosmology, and FITS file management.